Not sure why he would tell you that, but waxing the clear coat won`t hurt a thing. It helps protect it by shedding contaminates and certain waxes (if not most) block UV rays which degrade the clearcoat over time.
Not saying your paint will magically last forever, but it will stay in better shape longer. For Meguiars Ultimate Liquid wax you are looking at applying every 3-4 months to get maximum benefit.
Just be sure not to pick anything up in your applicator pad that can cause scratches.
Edit: Clearcoats come with their own UV inhibitors that protect the paint underneath, which is why he probably told you not to bother waxing. However, these UV inhibitors can only absorb so much over their lifetime before breaking down, causing oxidation and then clear coat failure. Wax/sealants/coatings act as a sacrificial barrier to your clearcoat, prolonging its life. Waxing isn`t strictly necessary, but it sure helps. My wife never waxed her car after buying it in college and after 7-8 years has the clearcoat failure to prove it. I will say that there is a difference in not being necessary for the clearcoat and being harmful to the clearcoat. I`m still confused as to why he would tell you that it is "not good" to wax.