*I* might take it to the shop and ask them about it. Nothing wrong with putting them on the spot since they've put YOU out. But don't let them con you with some filler-rich glaze that only hides them.
If they are rotary-induced holograms, you just need to polish them out with something abrasive enough to level the clear (at a very fine level). Those holograms are the CLASSIC difinition of "swirl marks", they're just another form of marring that needs to be abraded until it's gone. Generally, something like DACP with a random orbital should get them out, but you might have to work the paint for a while. Just don't get carried away and remove too much clear, the holograms probably aren't all that deep. One of the problems, especially this time of year when it's hard to pull the car out into the sun, is knowing when you've really removed them. Follow up with something milder than the DACP if needed.